STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_2017KEGG: sco:SCO6361 integral membrane protein. (310 aa)    
Predicted Functional Partners:
Gobs_2016
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: kra:Krad_2001 ABC transporter-related protein.
 
     0.941
Gobs_0021
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcv:Bcav_1052 ABC transporter related.
 
     0.727
Gobs_1431
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nca:Noca_0249 ABC transporter related.
 
     0.683
Gobs_1681
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV_933 ABC transporter ATP-binding protein.
  
     0.566
Gobs_3543
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV_933 ABC transporter ATP-binding protein.
  
     0.563
Gobs_2014
PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sma:SAV_6038 two-component system sensor kinase.
 
     0.551
Gobs_1682
KEGG: sen:SACE_6628 hypothetical protein.
  
     0.513
Gobs_2921
KEGG: sen:SACE_2702 putative exporter of polyketide antibiotics-like protein.
  
 
 0.495
Gobs_2015
KEGG: fre:Franean1_4684 two component LuxR family transcriptional regulator; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; Bacterio-opsin activator HTH domain protein; sigma-70 region 4 domain protein; SMART: response regulator receiver; regulatory protein LuxR.
       0.489
Gobs_4838
PFAM: ABC-2 type transporter; KEGG: bcv:Bcav_1586 ABC-2 type transporter.
 
  
 0.487
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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