Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Gobs_2068TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: tfu:Tfu_1983 cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (443 aa)    
Predicted Functional Partners:
Gobs_2069
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: sgr:SGR_5600 putative nitrogen fixation protein NifU-related protein.
 
 
 0.997
Gobs_2067
FeS assembly ATPase SufC; KEGG: sma:SAV_6328 ABC transporter ATP-binding protein; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.989
Gobs_2064
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: nfa:nfa35600 hypothetical protein.
 
 
 0.979
Gobs_2065
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: nca:Noca_2551 FeS assembly protein SufD.
 
 
 0.978
Gobs_2070
PFAM: protein of unknown function DUF59; KEGG: saq:Sare_3304 hypothetical protein.
 
  
 0.929
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
    
 0.909
Gobs_2253
PFAM: response regulator receiver; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SMART: response regulator receiver; KEGG: fal:FRAAL1961 putative thioredoxin reductase.
  
 
  0.906
Gobs_3693
Thioredoxin-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sen:SACE_7076 response regulator/thioredoxin- disulfide reductase.
  
 
  0.905
Gobs_3770
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dau:Daud_0559 thioredoxin reductase.
  
 
  0.905
Gobs_5084
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: fra:Francci3_4536 thioredoxin reductase.
  
 
  0.905
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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