STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_2118PFAM: protein of unknown function DUF1360; KEGG: fal:FRAAL4124 hypothetical protein. (216 aa)    
Predicted Functional Partners:
Gobs_0117
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: nfa:nfa18850 hypothetical protein.
  
     0.690
Gobs_2284
PFAM: ATP-binding region ATPase domain protein; KEGG: fre:Franean1_6671 putative anti-sigma regulatory factor, serine/threonine protein kinase.
  
     0.685
Gobs_2553
Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: sma:SAV_7158 regulator of sigma factor.
  
     0.679
Gobs_1676
KEGG: saq:Sare_3801 hypothetical protein.
  
     0.610
Gobs_2117
KEGG: stp:Strop_3723 hypothetical protein.
       0.551
Gobs_2432
KEGG: fra:Francci3_0218 putative serine/threonine kinase anti-sigma factor.
  
     0.550
Gobs_4654
KEGG: fre:Franean1_6479 hypothetical protein.
  
     0.527
Gobs_0809
KEGG: fal:FRAAL0713 hypothetical protein.
 
     0.525
ku
Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
       0.500
Gobs_2120
TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: fal:FRAAL4382 hypothetical protein.
       0.500
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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