Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Gobs_2140PFAM: lipolytic protein G-D-S-L family; KEGG: kra:Krad_3837 GDSL family lipase. (207 aa)    
Predicted Functional Partners:
Gobs_0063
KEGG: hypothetical protein.
  
 
 0.512
Gobs_2139
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rer:RER_54860 3-oxoacyl-[acyl-carrier- protein] reductase.
       0.429
Gobs_2138
PFAM: protein of unknown function DUF350; KEGG: kra:Krad_2756 hypothetical protein.
 
     0.423
Gobs_2141
KEGG: mba:Mbar_A2860 hypothetical protein.
       0.403
Gobs_2142
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: sen:SACE_3314 putative surface layer protein.
       0.403
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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