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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_2162PFAM: protein of unknown function UPF0060; KEGG: sma:SAV_4756 hypothetical protein. (113 aa)    
Predicted Functional Partners:
Gobs_2161
PFAM: protein of unknown function DUF1486; KEGG: sus:Acid_4282 hypothetical protein.
       0.757
Gobs_2164
PFAM: protein of unknown function DUF72; KEGG: art:Arth_3443 hypothetical protein.
       0.567
Gobs_2163
KEGG: xau:Xaut_1107 hypothetical protein.
       0.557
Gobs_0131
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bcv:Bcav_0776 transcriptional regulator, MarR family.
  
     0.411
Gobs_2160
KEGG: rha:RHA1_ro02123 hypothetical protein.
       0.407
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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