Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Gobs_2292PFAM: ribonuclease BN; KEGG: rer:RER_12720 hypothetical protein. (328 aa)    
Predicted Functional Partners:
Gobs_2291
PFAM: protein of unknown function DUF336; KEGG: sco:SCO2848 hypothetical protein; Belongs to the UPF0303 family.
       0.552
Gobs_0924
KEGG: fra:Francci3_1317 hypothetical protein.
  
     0.525
Gobs_1970
PFAM: Abortive infection protein; KEGG: nfa:nfa11920 hypothetical protein.
  
    0.436
Gobs_2293
KEGG: sco:SCO3824 ABC-transporter ATP-binding component; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.420
Gobs_2294
PFAM: ABC-2 type transporter; KEGG: bcv:Bcav_1236 ABC-2 type transporter.
       0.420
kynA
Tryptophan 23-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
       0.418
Gobs_4406
PFAM: Phosphoesterase HXTX; KEGG: ace:Acel_0391 2',5' RNA ligase.
 
     0.411
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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