Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_2297PFAM: low temperature requirement A; KEGG: npu:Npun_R4883 low temperature requirement A. (403 aa)    
Predicted Functional Partners:
Gobs_1692
KEGG: sus:Acid_7230 hypothetical protein.
  
     0.645
Gobs_1682
KEGG: sen:SACE_6628 hypothetical protein.
  
     0.577
Gobs_2296
Hypothetical protein.
       0.574
Gobs_3472
PFAM: Tetratricopeptide TPR_4; TPR repeat- containing protein; SMART: Tetratricopeptide repeat; KEGG: ade:Adeh_3415 TPR repeat-containing protein.
  
     0.479
Gobs_1190
PFAM: peptidase M28; KEGG: sen:SACE_5007 hypothetical protein.
  
     0.458
Gobs_1999
PFAM: transposase IS4 family protein; KEGG: sco:SCO7812 insertion element transposase.
  
     0.407
Gobs_1206
PFAM: transposase IS4 family protein; KEGG: sco:SCO7812 insertion element transposase.
  
     0.406
Gobs_2602
PFAM: transposase IS4 family protein; KEGG: sco:SCO7812 insertion element transposase.
  
     0.406
Gobs_4542
KEGG: sen:SACE_6132 hypothetical protein.
  
     0.400
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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