STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_2425PFAM: alpha/beta hydrolase fold; KEGG: nca:Noca_3427 alpha/beta hydrolase fold. (290 aa)    
Predicted Functional Partners:
Gobs_2424
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III; KEGG: dds:Ddes_1613 3-oxoacyl-(acyl-carrier- protein) synthase III.
       0.774
Gobs_2423
PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; carboxyl transferase; biotin/lipoyl attachment domain- containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: rer:RER_40770 acyl-CoA carboxylase.
  
 
 0.730
Gobs_2422
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: chl:Chy400_1585 3-oxoacyl-(acyl-carrier- protein) reductase.
  
  0.634
Gobs_2357
PFAM: alpha/beta hydrolase fold; KEGG: rpf:Rpic12D_4461 alpha/beta hydrolase fold protein.
  
     0.538
Gobs_2530
KEGG: kra:Krad_2734 hypothetical protein.
  
     0.490
Gobs_2426
PFAM: protein of unknown function UCP012608; KEGG: rha:RHA1_ro06724 hypothetical protein.
       0.482
Gobs_0392
PFAM: glycoside hydrolase family 16; KEGG: gdj:Gdia_1873 glycoside hydrolase family 16.
  
     0.461
Gobs_4950
PFAM: von Willebrand factor type A; VWA containing CoxE family protein; SMART: von Willebrand factor type A; KEGG: nfa:nfa11990 hypothetical protein.
  
     0.436
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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