STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_2518KEGG: sco:SCO5944 hypothetical protein. (388 aa)    
Predicted Functional Partners:
Gobs_2517
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: gur:Gura_3580 antibiotic biosynthesis monooxygenase.
 
    0.649
Gobs_2519
PFAM: protein of unknown function DUF849; KEGG: met:M446_1737 hypothetical protein.
       0.477
Gobs_2264
KEGG: rha:RHA1_ro00321 hypothetical protein.
  
     0.466
Gobs_0128
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bcv:Bcav_0314 fumarylacetoacetate (FAA) hydrolase.
  
     0.463
Gobs_2516
KEGG: mav:MAV_0134 hypothetical protein.
       0.458
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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