STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_2759PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rop:ROP_53120 putative myo-inositol 2- dehydrogenase. (336 aa)    
Predicted Functional Partners:
Gobs_2746
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rer:RER_20170 2-keto-myo-inositol dehydratase IolE.
 
 
 0.981
Gobs_1866
PFAM: inositol monophosphatase; KEGG: fre:Franean1_5201 inositol-phosphate phosphatase.
    
 0.906
Gobs_2758
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rha:RHA1_ro05268 hydroxypyruvate isomerase; Belongs to the hyi family.
 
    0.894
Gobs_2745
PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rop:ROP_10690 3D-(3,5/4)- trihydroxycyclohexane-1,2-dione hydrolase; Belongs to the TPP enzyme family.
 
  
 0.877
Gobs_2744
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: rop:ROP_10680 5-deoxy-glucuronate isomerase.
 
  
 0.865
Gobs_2205
PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Oxidoreductase domain; KEGG: smd:Smed_5686 glycosyl transferase group 1.
  
     0.763
Gobs_2748
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sen:SACE_2905 myo-inositol catabolism protein.
 
  
 0.739
Gobs_2742
PFAM: PfkB domain protein; KEGG: rop:ROP_10660 putative 5-dehydro-2- deoxygluconokinase.
 
  
 0.702
Gobs_2760
PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: rer:RER_20330 LacI family transcriptional regulator.
 
   
 0.657
Gobs_2764
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sen:SACE_2907 sugar phosphate isomerase/epimerase.
 
  
 0.655
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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