STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_2829PFAM: thioesterase superfamily protein; KEGG: psa:PST_3573 cytosolic long-chain acyl-CoA thioester hydrolase family protein. (180 aa)    
Predicted Functional Partners:
Gobs_2830
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
       0.594
accA
acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
  
  
 0.552
Gobs_0879
PFAM: carboxyl transferase; KEGG: rer:RER_58860 acetyl-CoA carboxylase beta chain.
  
  
 0.552
Gobs_3336
DNA polymerase III, epsilon subunit; KEGG: fre:Franean1_1813 hypothetical protein; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; Excinuclease ABC C subunit domain protein; SMART: Exonuclease; Excinuclease ABC C subunit domain protein.
       0.551
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
    0.527
Gobs_0296
PFAM: MaoC domain protein dehydratase; KEGG: sgr:SGR_5802 hypothetical protein.
  
  
 0.501
Gobs_3510
PFAM: Acyl transferase; biotin/lipoyl attachment domain-containing protein; KEGG: saq:Sare_3620 acyl transferase.
  
  
 0.497
Gobs_2105
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: fal:FRAAL4522 enoyl-(acyl carrier protein) reductase.
   
  
 0.487
Gobs_2831
Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: kra:Krad_2490 GntR family transcriptional regulator.
       0.427
Gobs_2828
PFAM: Aldehyde Dehydrogenase; KEGG: cag:Cagg_2534 succinic semialdehyde dehydrogenase.
   
   0.420
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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