STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_3003PFAM: glycosyl transferase group 1; KEGG: saq:Sare_1909 glycosyl transferase group 1. (375 aa)    
Predicted Functional Partners:
Gobs_3002
KEGG: tfu:Tfu_0334 hypothetical protein.
 
     0.932
Gobs_3005
KEGG: stp:Strop_1916 hypothetical protein.
 
    0.930
Gobs_3004
PFAM: virulence factor MVIN family protein; multi antimicrobial extrusion protein MatE; KEGG: saq:Sare_1908 virulence factor MviN family protein.
 
     0.887
Gobs_3007
PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: saq:Sare_1905 thiamin pyrophosphokinase catalytic region.
 
     0.855
Gobs_3006
KEGG: sen:SACE_5246 hypothetical protein.
 
     0.834
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
  
    0.770
Gobs_2685
KEGG: tfu:Tfu_1772 hypothetical protein.
  
     0.663
Gobs_3000
PFAM: NUDIX hydrolase; KEGG: mgi:Mflv_3501 NUDIX hydrolase.
  
    0.661
Gobs_0370
PFAM: glycosyl transferase group 1; KEGG: kra:Krad_0892 glycosyl transferase group 1.
  
     0.549
Gobs_0418
KEGG: kra:Krad_0013 undecaprenyl-phosphate galactose phosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.548
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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