STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_3184PFAM: glycosyl transferase group 1; KEGG: ace:Acel_1353 phosphatidylinositol alpha- mannosyltransferase. (404 aa)    
Predicted Functional Partners:
Gobs_3185
PFAM: lipid A biosynthesis acyltransferase; KEGG: fra:Francci3_1363 lipid A biosynthesis lauroyl acyltransferase.
 
   
 0.941
Gobs_3183
KEGG: rha:RHA1_ro06883 hypothetical protein.
 
     0.892
Gobs_3186
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rop:ROP_68590 phosphatidylinositol synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
  
 0.887
thrS
TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: sen:SACE_2004 threonyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
     0.821
Gobs_3187
PFAM: histidine triad (HIT) protein; KEGG: sgr:SGR_6005 hypothetical protein.
  
  
 0.802
pdxS
Pyridoxine biosynthesis protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family.
       0.637
Gobs_3181
KEGG: cmi:CMM_0890 hypothetical protein.
       0.628
pdxT
SNO glutamine amidotransferase; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.
       0.627
Gobs_2676
KEGG: stp:Strop_2236 hypothetical protein.
  
     0.599
Gobs_5077
PFAM: major facilitator superfamily MFS_1; KEGG: tfu:Tfu_3101 hypothetical protein.
  
     0.550
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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