Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Gobs_3192PFAM: Protein of unknown function, PGPGW, transmembrane; KEGG: kra:Krad_3068 hypothetical protein. (156 aa)    
Predicted Functional Partners:
Gobs_3193
KEGG: ace:Acel_0351 putative transmembrane anti- sigma factor.
 
     0.795
Gobs_3194
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: ace:Acel_0350 ECF subfamily RNA polymerase sigma-24 factor.
       0.754
Gobs_3195
PFAM: sporulation and cell division protein SsgA; KEGG: fre:Franean1_5158 sporulation and cell division protein SsgA.
       0.595
Gobs_0643
Transcriptional regulator, MucR family; KEGG: msm:MSMEG_6081 hypothetical protein.
  
     0.473
Gobs_4296
KEGG: fre:Franean1_5856 RpiR family transcriptional regulator.
  
     0.449
Gobs_1131
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: rop:ROP_17340 putative MerR family transcriptional regulator.
 
     0.425
Gobs_3291
PFAM: protein of unknown function DUF422; KEGG: stp:Strop_3246 hypothetical protein.
  
     0.415
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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