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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_3207KEGG: saq:Sare_0174 ABC-type branched-chain amino acid transport systems periplasmic component-like protein. (446 aa)    
Predicted Functional Partners:
Gobs_1653
PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase; KEGG: vap:Vapar_1228 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.978
Gobs_3204
PFAM: inner-membrane translocator; KEGG: rop:ROP_07210 putative ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.927
Gobs_3203
PFAM: inner-membrane translocator; Cna B domain protein; KEGG: rop:ROP_07200 putative ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.902
Gobs_3205
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rop:ROP_07220 putative ABC transporter ATP- binding protein.
 
  
 0.888
Gobs_3206
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro00994 ABC branched-chain amino acid transport, ATP-binding component.
 
  
 0.864
Gobs_3830
PFAM: inner-membrane translocator; KEGG: sco:SCO0707 branched-chain amino acid ABC transport permease; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.835
Gobs_1652
PFAM: inner-membrane translocator; KEGG: bav:BAV2833 ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.812
Gobs_3831
PFAM: inner-membrane translocator; KEGG: sgr:SGR_1184 putative branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.792
Gobs_1654
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: chy:CHY_2228 high affinity branched-chain amino acid ABC transporter, ATP-binding protein.
 
  
 0.734
Gobs_3832
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO0709 branched-chain amino acid transport ATP-binding protein.
 
  
 0.713
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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