STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_3253KEGG: sen:SACE_5829 hypothetical protein. (276 aa)    
Predicted Functional Partners:
Gobs_3254
TIGRFAM: DivIVA domain; PFAM: DivIVA family protein; KEGG: sen:SACE_5830 cell division initiation protein.
 
    0.963
Gobs_2943
KEGG: sen:SACE_0437 hypothetical protein.
  
     0.764
Gobs_0773
KEGG: sen:SACE_3415 hypothetical protein.
  
     0.760
Gobs_2804
KEGG: sen:SACE_3300 hypothetical protein.
  
     0.757
Gobs_1544
KEGG: similar to KIAA0545 protein.
  
     0.747
Gobs_4078
KEGG: sen:SACE_6160 hypothetical protein.
  
     0.741
Gobs_1468
KEGG: sen:SACE_1520 hypothetical protein.
  
     0.739
Gobs_0030
KEGG: mpa:MAP0012c hypothetical protein.
  
     0.734
Gobs_3559
KEGG: nfa:nfa37720 hypothetical protein.
  
     0.732
Gobs_1545
PFAM: protein of unknown function DUF477; KEGG: sen:SACE_1337 hypothetical protein.
  
     0.730
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.