Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Gobs_3286KEGG: nca:Noca_3078 hypothetical protein. (161 aa)    
Predicted Functional Partners:
Gobs_3285
KEGG: kra:Krad_3215 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.
       0.825
Gobs_3287
KEGG: cms:CMS_1780 hypothetical protein.
       0.804
Gobs_3289
PFAM: GCN5-related N-acetyltransferase; KEGG: stp:Strop_3245 GCN5-related N- acetyltransferase.
       0.585
Gobs_3291
PFAM: protein of unknown function DUF422; KEGG: stp:Strop_3246 hypothetical protein.
       0.544
whiB-3
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.540
Gobs_3288
PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: tfu:Tfu_1048 hypothetical protein.
       0.530
Gobs_3283
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: saq:Sare_3464 methyltransferase type 11.
 
     0.528
Gobs_4406
PFAM: Phosphoesterase HXTX; KEGG: ace:Acel_0391 2',5' RNA ligase.
  
     0.522
Gobs_3290
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rha:RHA1_ro01101 beta-carotene ketolase.
       0.521
Gobs_3195
PFAM: sporulation and cell division protein SsgA; KEGG: fre:Franean1_5158 sporulation and cell division protein SsgA.
  
     0.495
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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