Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Gobs_3329PFAM: cyclase/dehydrase; Polyketide cyclase/dehydrase; KEGG: nfa:nfa17160 hypothetical protein. (144 aa)    
Predicted Functional Partners:
Gobs_3328
KEGG: sgr:SGR_5375 putative ion transporting ATPase.
 
    0.856
Gobs_3326
TIGRFAM: glucokinase, ROK family; PFAM: ROK family protein; KEGG: art:Arth_1548 glucokinase.
       0.825
Gobs_3327
KEGG: sen:SACE_1699 hypothetical protein.
       0.825
Gobs_4228
PFAM: ABC-1 domain protein; KEGG: stp:Strop_3736 hypothetical protein.
  
 
 
 0.805
Gobs_3754
PFAM: ABC-1 domain protein; KEGG: saq:Sare_4117 hypothetical protein.
  
 
 
 0.772
Gobs_4622
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: fre:Franean1_6157 XRE family transcriptional regulator.
  
   
 0.764
Gobs_4586
PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: sen:SACE_6955 phospholipid/glycerol acyltransferase.
 
     0.749
Gobs_4608
PFAM: Protein of unknown function DUF2596; KEGG: saq:Sare_0399 hypothetical protein.
  
     0.721
Gobs_0513
PFAM: Anion-transporting ATPase; KEGG: fal:FRAAL6550 putative ion-transporting ATPase.
 
    0.719
Gobs_0512
PFAM: Anion-transporting ATPase; KEGG: rer:RER_04650 anion-transporting ATPase.
 
    0.697
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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