Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Gobs_3530Transposase; KEGG: rha:RHA1_ro10149 transposase. (399 aa)    
Predicted Functional Partners:
Gobs_3355
KEGG: nfa:nfa23230 hypothetical protein.
  
  
 0.851
Gobs_3529
PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rha:RHA1_ro10031 transposase.
 
   
 0.802
Gobs_0868
KEGG: kra:Krad_0382 hypothetical protein.
   
    0.784
Gobs_3698
TIGRFAM: RecB family nuclease, putative; KEGG: tgr:Tgr7_1784 hypothetical protein.
  
    0.781
Gobs_3665
KEGG: mkm:Mkms_0818 putative DNA helicase.
  
    0.780
Gobs_2744
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: rop:ROP_10680 5-deoxy-glucuronate isomerase.
   
    0.773
Gobs_1206
PFAM: transposase IS4 family protein; KEGG: sco:SCO7812 insertion element transposase.
  
     0.705
Gobs_2602
PFAM: transposase IS4 family protein; KEGG: sco:SCO7812 insertion element transposase.
  
     0.705
Gobs_1999
PFAM: transposase IS4 family protein; KEGG: sco:SCO7812 insertion element transposase.
  
     0.701
Gobs_2623
Hypothetical protein; KEGG: aav:Aave_3790 transposase, IS4 family protein.
  
     0.699
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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