STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
psuGIndigoidine synthase A family protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family. (316 aa)    
Predicted Functional Partners:
Gobs_4378
Purine nucleotide phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
 
 
  0.920
Gobs_4398
KEGG: nca:Noca_3535 thymidine phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Pyrimidine nucleoside phosphorylase domain; Glycosyl transferase, family 3-like.
 
  
  0.919
Gobs_4386
TIGRFAM: uracil phosphoribosyltransferase; KEGG: stp:Strop_0829 uracil phosphoribosyltransferase; Belongs to the UPRTase family.
    
  0.908
Gobs_3131
PFAM: dihydroorotate oxidase; KEGG: zmo:ZMO0120 hypothetical protein.
   
 
  0.904
pyrR
Uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant.
     
 0.904
Gobs_0864
PFAM: CMP/dCMP deaminase zinc-binding; KEGG: rer:RER_53040 cytosine deaminase.
     
  0.900
Gobs_3558
PFAM: PfkB domain protein; KEGG: saq:Sare_1435 ribokinase-like domain- containing protein; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.867
Gobs_3556
KEGG: saq:Sare_1437 hypothetical protein.
       0.641
Gobs_4403
PFAM: basic membrane lipoprotein; KEGG: nca:Noca_3541 basic membrane lipoprotein.
 
     0.546
Gobs_2757
PFAM: 4-oxalocrotonate tautomerase; KEGG: esi:Exig_0529 4-oxalocrotonate tautomerase.
     
 0.402
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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