Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Gobs_3565PFAM: histone deacetylase superfamily; KEGG: sen:SACE_1779 acetoin dehydrogenase. (393 aa)    
Predicted Functional Partners:
Gobs_3564
PFAM: CoA-binding domain protein; GCN5-related N- acetyltransferase; KEGG: sen:SACE_1780 acetyl-CoA synthetase.
 
     0.923
Gobs_1732
PFAM: amine oxidase; KEGG: sco:SCO1454 amino oxidase.
   
 0.913
Gobs_0749
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: amr:AM1_A0018 sensor histidine kinase, putative.
    
 0.886
Gobs_1396
PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: kra:Krad_2862 ATPase central domain- containing protein.
   
 0.876
Gobs_3526
PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: kra:Krad_2862 ATPase central domain- containing protein.
   
 0.876
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
  
 
 
 0.824
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
    
 0.821
Gobs_2550
PFAM: helicase domain protein; SNF2-related protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: nca:Noca_1675 helicase domain-containing protein.
    
 0.820
Gobs_3743
PFAM: helicase domain protein; SNF2-related protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein; KEGG: saq:Sare_3088 helicase domain-containing protein.
    
 0.820
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 0.817
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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