Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Gobs_3787PFAM: Dimethylmenaquinone methyltransferase; KEGG: reh:H16_B1818 demethylmenaquinone methyltransferase. (227 aa)    
Predicted Functional Partners:
Gobs_2243
PFAM: Phosphogluconate dehydrogenase, NAD-binding, putative-like; 6-phosphogluconate dehydrogenase NAD- binding; KEGG: rxy:Rxyl_0198 6-phosphogluconate dehydrogenase, NAD-binding protein.
     0.948
Gobs_3786
KEGG: nar:Saro_2815 6-phosphogluconate dehydrogenase, NAD-binding.
 
     0.917
Gobs_3789
PFAM: Malate/L-lactate dehydrogenase; isocitrate/isopropylmalate dehydrogenase; KEGG: kol:Kole_0933 malate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
     
 0.799
Gobs_3790
KEGG: rxy:Rxyl_0202 hypothetical protein.
 
     0.798
Gobs_3788
PFAM: major facilitator superfamily MFS_1; KEGG: rxy:Rxyl_2414 major facilitator transporter.
       0.762
Gobs_3791
TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: msm:MSMEG_0984 trap transporter, 4tm/12tm fusion protein.
       0.762
Gobs_3792
KEGG: gtn:GTNG_2976 hypothetical protein.
       0.762
Gobs_3793
TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: pnu:Pnuc_0468 TRAP transporter solute receptor TAXI family protein.
       0.685
Gobs_3794
Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: sco:SCO6565 transcriptional regulator.
       0.475
Gobs_3795
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: cyn:Cyan7425_1650 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.409
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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