Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Gobs_4036TIGRFAM: DAK2 domain fusion protein YloV; PFAM: Dak phosphatase; KEGG: stp:Strop_1278 Dak phosphatase. (542 aa)    
Predicted Functional Partners:
Gobs_1609
TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: sen:SACE_1434 hypothetical protein.
 
 0.990
Gobs_4035
PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: DEAD-like helicase; helicase domain protein; KEGG: sen:SACE_6119 ATP-dependent DNA helicase RecG.
  
    0.920
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
 
     0.728
Gobs_4034
TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: rer:RER_24260 hypothetical protein.
 
     0.717
Gobs_4032
KEGG: sen:SACE_6104 large Ala/Glu-rich protein.
 
     0.651
rpmB
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: nfa:nfa41960 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
     
 0.628
Gobs_4681
PFAM: protein of unknown function DUF322; KEGG: nfa:nfa23390 hypothetical protein.
  
  
 0.532
Gobs_4685
PFAM: protein of unknown function DUF322; KEGG: fal:FRAAL6271 hypothetical protein.
  
  
 0.532
Gobs_3010
TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: stp:Strop_1913 DNA repair protein RecN.
   
    0.460
Gobs_3510
PFAM: Acyl transferase; biotin/lipoyl attachment domain-containing protein; KEGG: saq:Sare_3620 acyl transferase.
  
    0.457
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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