Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Gobs_4249KEGG: tfu:Tfu_0618 hypothetical protein. (384 aa)    
Predicted Functional Partners:
Gobs_4250
PFAM: alpha/beta hydrolase fold; KEGG: sgr:SGR_2353 putative hydrolase.
       0.562
Gobs_4248
Hypothetical protein.
       0.529
Gobs_1570
PFAM: ANTAR domain protein; GAF domain protein; SMART: GAF domain protein; KEGG: mab:MAB_2534c hypothetical protein.
  
     0.515
Gobs_4247
PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: sen:SACE_1070 molybdopterin biosynthesis-like protein MoeZ.
       0.511
Gobs_3633
PFAM: ANTAR domain protein; GAF domain protein; SMART: GAF domain protein; KEGG: sgr:SGR_6451 hypothetical protein.
  
     0.502
Gobs_0931
PFAM: Protein of unknown function DUF2252; KEGG: mmc:Mmcs_1350 hypothetical protein.
  
     0.490
Gobs_3435
PFAM: ANTAR domain protein; KEGG: kra:Krad_4477 response regulator receiver/ANTAR domain-containing protein.
  
     0.486
Gobs_3006
KEGG: sen:SACE_5246 hypothetical protein.
  
    0.481
Gobs_1566
PFAM: ANTAR domain protein; GAF domain protein; SMART: GAF domain protein; KEGG: kra:Krad_4477 response regulator receiver/ANTAR domain-containing protein.
  
     0.475
Gobs_1464
PFAM: ANTAR domain protein; GAF domain protein; SMART: GAF domain protein; KEGG: kra:Krad_2431 putative GAF sensor protein.
  
     0.473
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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