STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_4322PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cdi:DIP0174 ABC transporter ATP-binding protein. (253 aa)    
Predicted Functional Partners:
Gobs_4323
PFAM: ABC-2 type transporter; KEGG: cef:CE0178 putative O-antigen export system permease protein.
 
 
 0.995
Gobs_0349
PFAM: ABC-2 type transporter; KEGG: cag:Cagg_1558 ABC-2 type transporter.
 
 
 0.981
Gobs_0395
PFAM: ABC-2 type transporter; KEGG: cag:Cagg_1558 ABC-2 type transporter.
 
 
 0.981
Gobs_4321
PFAM: glycosyl transferase family 2; KEGG: mjl:Mjls_5373 glycosyl transferase family protein.
 
  
 0.923
Gobs_4324
Glycosyltransferase; KEGG: rha:RHA1_ro04109 glycosyltransferase.
 
  
 0.845
Gobs_0739
Hypothetical protein; KEGG: fre:Franean1_5526 transposase IS4 family protein.
  
  
 0.772
Gobs_4282
KEGG: fre:Franean1_5842 phosphoribosyltransferase.
   
    0.730
xerC
Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
   
    0.512
Gobs_1280
PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: kra:Krad_3986 CDP- glycerol:poly(glycerophosphate) glycerophosphotransferase.
 
 
 0.501
Gobs_4318
PFAM: glycosyl transferase family 2; KEGG: rop:ROP_63700 dTDP-rhamnose--alpha-D-N- acetylglucosamine-diphosphoryl polyprenol, alpha-3-L- rhamnosyl transferase.
 
  
 0.498
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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