STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_4530KEGG: sco:SCO4636 hypothetical protein; Belongs to the UPF0336 family. (148 aa)    
Predicted Functional Partners:
Gobs_4529
PFAM: MaoC domain protein dehydratase; KEGG: sco:SCO4637 hypothetical protein.
 
 
 0.998
Gobs_3509
Putative transcriptional regulator, PucR family; KEGG: stp:Strop_3377 hypothetical protein.
  
     0.689
Gobs_4528
PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: sen:SACE_3227 hypothetical protein.
  
    0.683
rpmG
TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: saq:Sare_4334 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
       0.679
Gobs_1885
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: sen:SACE_1823 fatty acid oxidation complex alpha subunit.
 
 0.630
Gobs_3510
PFAM: Acyl transferase; biotin/lipoyl attachment domain-containing protein; KEGG: saq:Sare_3620 acyl transferase.
  
   
 0.618
Gobs_2125
PFAM: Catalase related subgroup; Catalase domain protein; KEGG: nfa:nfa55390 putative catalase.
   
 0.599
Gobs_3372
PFAM: RDD domain containing protein; KEGG: sgr:SGR_5316 hypothetical protein.
  
    0.589
Gobs_1299
PFAM: Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; KR domain protein; FAD-binding 9 siderophore- interacting domain protein; GntR domain protein; short- chain dehydrogenase/reductase SDR; KEGG: sen:SACE_4377 oxidoreductase FAD-binding region.
  
 0.586
Gobs_1523
PFAM: thioesterase superfamily protein; KEGG: sco:SCO2676 hypothetical protein.
  
   
 0.510
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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