Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Gobs_4574PFAM: Phosphoglycerate mutase; KEGG: mmi:MMAR_0871 hypothetical protein. (211 aa)    
Predicted Functional Partners:
hemL
TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; aminotransferase class I and II; KEGG: fal:FRAAL0997 glutamate-1-semialdehyde aminotransferase.
  
  
 0.965
Gobs_4571
PFAM: ResB family protein; KEGG: nfa:nfa51560 putative cytochrome c biogenesis membrane protein.
 
    0.907
Gobs_4572
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: tfu:Tfu_2703 putative cytochrome c biogenesis membrane protein.
  
    0.889
Gobs_4570
TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: cytochrome c assembly protein; KEGG: mgi:Mflv_0049 cytochrome c assembly protein.
  
    0.874
Gobs_4578
PFAM: Uroporphyrinogen III synthase HEM4; Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mkm:Mkms_0691 uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase.
     
 0.832
Gobs_4573
PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Thioredoxin domain; KEGG: sco:SCO4472 secreted protein.
       0.825
Gobs_4577
Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: tfu:Tfu_2730 delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
       0.825
Gobs_4576
KEGG: sen:SACE_6938 hypothetical protein.
       0.811
Gobs_1869
KEGG: rop:ROP_68120 hypothetical protein.
  
     0.738
Gobs_3255
PFAM: protein of unknown function YGGT; KEGG: nca:Noca_3056 hypothetical protein.
  
     0.722
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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