Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Gobs_4595PFAM: Ppx/GppA phosphatase; KEGG: mav:MAV_4656 Ppx/GppA phosphatase family protein. (320 aa)    
Predicted Functional Partners:
Gobs_0923
PFAM: Ppx/GppA phosphatase; KEGG: stp:Strop_0894 Ppx/GppA phosphatase.
  
  
0.951
Gobs_3171
(p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
  
 
 0.921
Gobs_4594
KEGG: cur:cur_0218 hypothetical protein.
       0.825
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
 
  
 0.727
Gobs_4596
KEGG: stp:Strop_0338 hypothetical protein.
       0.664
Gobs_3985
PFAM: protein of unknown function DUF344; KEGG: cyp:PCC8801_4140 protein of unknown function DUF344.
 
  
 0.542
Gobs_3838
PFAM: protein of unknown function DUF344; KEGG: fal:FRAAL4412 hypothetical protein.
 
  
 0.520
Gobs_3213
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: sen:SACE_5742 putative glutamate synthase(NADPH) large subunit.
     
 0.443
tmk-2
Major facilitator superfamily MFS_1; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.417
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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