STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_4841TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rxy:Rxyl_2343 3-hydroxybutyrate dehydrogenase. (251 aa)    
Predicted Functional Partners:
Gobs_0443
TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; Thioesterase; KEGG: cti:RALTA_B0309 putative acetoacetyl-coenzyme A synthetase.
  
 
 0.915
Gobs_0916
TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; KEGG: cti:RALTA_B0309 putative acetoacetyl-coenzyme A synthetase.
  
 
 0.915
Gobs_4337
KEGG: art:Arth_1388 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase.
 
 
 0.915
Gobs_5035
PFAM: pyruvate carboxyltransferase; KEGG: mjl:Mjls_1558 hydroxymethylglutaryl-CoA lyase.
   
 
 0.915
Gobs_4338
KEGG: fre:Franean1_4284 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase.
  
 0.909
Gobs_4892
TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: sco:SCO1393 acetoacetyl-CoA synthetase.
    
  0.900
Gobs_4842
Putative phytochrome sensor protein; PFAM: GAF domain protein; SMART: GAF domain protein; KEGG: saq:Sare_1796 transcriptional regulator, CdaR.
 
     0.849
Gobs_4995
PFAM: alpha/beta hydrolase fold; KEGG: tfu:Tfu_0079 alpha/beta hydrolase superfamily protein.
  
  0.606
Gobs_1091
PFAM: alpha/beta hydrolase fold; KEGG: dge:Dgeo_0803 alpha/beta hydrolase fold.
  
  0.471
Gobs_3510
PFAM: Acyl transferase; biotin/lipoyl attachment domain-containing protein; KEGG: saq:Sare_3620 acyl transferase.
  
 
 0.448
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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