STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_4880KEGG: mav:MAV_2170 acyl carrier protein. (80 aa)    
Predicted Functional Partners:
Gobs_3418
KEGG: kra:Krad_0034 hypothetical protein.
  
     0.610
Gobs_4879
KEGG: hypothetical protein.
       0.568
Gobs_0852
KEGG: sco:SCO0827 hypothetical protein.
  
     0.507
Gobs_4881
PFAM: 2-nitropropane dioxygenase NPD; KEGG: rha:RHA1_ro01277 2-nitropropane dioxygenase.
       0.495
Gobs_4877
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: bcv:Bcav_0343 activator of HSP90 ATPase 1 family protein.
 
     0.490
Gobs_2314
PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: fra:Francci3_1617 protein of unknown function DUF899, thioredoxin-like.
  
     0.452
Gobs_3190
KEGG: rha:RHA1_ro03393 hypothetical protein.
  
     0.451
Gobs_2945
KEGG: fre:Franean1_3090 hypothetical protein.
  
     0.433
Gobs_4668
PFAM: ATP-binding region ATPase domain protein; KEGG: fre:Franean1_5624 putative anti-sigma regulatory factor, serine/threonine protein kinase.
  
     0.423
Gobs_3295
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: fal:FRAAL2165 CDP-diacylglycerol-inositol 3- phosphatidyltransferase.
  
     0.416
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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