STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_4959PFAM: major facilitator superfamily MFS_1; KEGG: bcv:Bcav_0371 major facilitator superfamily MFS_1. (407 aa)    
Predicted Functional Partners:
Gobs_4958
PFAM: GCN5-related N-acetyltransferase; KEGG: stp:Strop_2364 GCN5-related N- acetyltransferase.
  
    0.776
Gobs_4957
PFAM: aldo/keto reductase; KEGG: mkm:Mkms_1378 2,5-didehydrogluconate reductase.
       0.538
Gobs_4960
KEGG: hypothetical protein.
       0.494
Gobs_1875
KEGG: stp:Strop_1484 hypothetical protein.
  
     0.416
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.