Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Gobs_4987PFAM: protein of unknown function DUF328; KEGG: sen:SACE_5940 hypothetical protein; Belongs to the UPF0246 family. (252 aa)    
Predicted Functional Partners:
Gobs_2195
PFAM: major facilitator superfamily MFS_1; KEGG: rxy:Rxyl_1563 major facilitator transporter.
  
    0.801
Gobs_4810
PFAM: major facilitator superfamily MFS_1; KEGG: ace:Acel_1218 major facilitator transporter.
  
    0.801
Gobs_3113
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
       0.564
Gobs_4988
KEGG: kra:Krad_2025 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; PAS fold-3 domain protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: protein phosphatase 2C domain protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein.
       0.510
Gobs_4986
TIGRFAM: formaldehyde dehydrogenase, glutathione- independent; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: aau:AAur_0480 glutathione-independent formaldehyde dehydrogenase.
       0.482
Gobs_3456
Membrane protein; KEGG: mlu:Mlut_09920 predicted membrane protein.
 
     0.450
Gobs_3927
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: mab:MAB_3067c hypothetical protein.
  
   
 0.420
Gobs_2154
PFAM: Luciferase-like, subgroup; KEGG: nfa:nfa23480 putative monooxygenase.
  
     0.406
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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