STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_5000KEGG: nca:Noca_3596 hypothetical protein. (183 aa)    
Predicted Functional Partners:
Gobs_4999
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: nca:Noca_3595 response regulator receiver.
 
 
 0.997
Gobs_5001
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: kra:Krad_0323 response regulator receiver protein.
 
 
 0.997
Gobs_5002
MCP methyltransferase, CheR-type; KEGG: kra:Krad_0322 protein-glutamate O- methyltransferase; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type.
 
   
 0.925
Gobs_4998
KEGG: nca:Noca_3594 hypothetical protein.
 
     0.919
cheB
Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
   
 0.891
Gobs_0963
KEGG: nca:Noca_0744 hypothetical protein.
 
   
 0.785
Gobs_0966
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
     0.778
Gobs_0988
PFAM: FlgN family protein; KEGG: ace:Acel_0833 hypothetical protein.
  
     0.772
Gobs_0976
PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: ace:Acel_0843 flagellar biosynthesis/type III secretory pathway protein-like.
 
     0.767
Gobs_0957
Hypothetical protein; KEGG: GH10507 gene product from transcript GH10507- RA.
 
     0.764
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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