STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_0186PFAM: secretory lipase; KEGG: secretory lipase; K01175. (481 aa)    
Predicted Functional Partners:
Gbro_1520
PFAM: secretory lipase; KEGG: sml:Smlt3749 putative exported lipase.
 
     0.733
Gbro_0187
PFAM: regulatory protein TetR; KEGG: bcj:BCAM0700 TetR family regulatory protein.
 
     0.672
Gbro_4814
Ethanolamine utilization protein-like protein; KEGG: hypothetical protein.
  
     0.668
Gbro_4647
KEGG: hypothetical protein.
  
     0.641
Gbro_3997
PFAM: aminoglycoside phosphotransferase; KEGG: mlo:mll6593 hypothetical protein.
  
  
 0.618
Gbro_1063
PFAM: secretory lipase; KEGG: bch:Bcen2424_3524 secretory lipase.
 
     0.601
Gbro_1762
Hypothetical protein; KEGG: YALI0B09867p.
  
     0.563
Gbro_4300
PFAM: cutinase; KEGG: hypothetical protein.
  
    0.546
Gbro_0188
PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: mxa:MXAN_3480 Rieske family iron-sulfur cluster-binding protein.
  
    0.541
Gbro_0264
PFAM: secretory lipase; KEGG: smt:Smal_3161 hypothetical protein.
  
     0.515
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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