STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_0200PFAM: Methyltransferase type 12; Methyltransferase type 11; NodS family protein; KEGG: pfs:PFLU3372 hypothetical protein. (240 aa)    
Predicted Functional Partners:
Gbro_0201
PFAM: LmbE family protein; KEGG: xca:xccb100_2614 putative N- acetylglucosaminylphosphatidylinositol deacetylase.
     0.996
Gbro_0202
KEGG: pfo:Pfl01_2543 hypothetical protein.
     0.992
Gbro_0203
PFAM: glycosyl transferase family 2; KEGG: ppu:PP_3256 glycosyl transferase, group 2 family protein.
 
  
 0.970
Gbro_0199
PFAM: ANTAR domain protein; GAF domain protein; KEGG: aav:Aave_2149 response regulator receiver/ANTAR domain-containing protein.
       0.817
Gbro_0722
Hypothetical protein.
 
     0.617
Gbro_0721
Glycosyltransferase-like protein; KEGG: amc:MADE_01232 glycosyl transferase, family 2.
 
  
 0.610
Gbro_0207
PFAM: UbiA prenyltransferase; KEGG: sun:SUN_1522 UbiA prenyltransferase family protein; Belongs to the UbiA prenyltransferase family.
  
    0.595
Gbro_1061
KEGG: afw:Anae109_1412 undecaprenyl-phosphate galactose phosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
   
 0.589
Gbro_0206
PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: ade:Adeh_4001 phosphoesterase, PA-phosphatase related.
     
 0.564
Gbro_0204
KEGG: pin:Ping_2040 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like.
     
 0.563
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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