STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_0248SMART: regulatory protein ArsR; KEGG: scl:sce1129 ArsR family transcriptional regulator. (109 aa)    
Predicted Functional Partners:
Gbro_0247
KEGG: bmj:BMULJ_04877 hypothetical protein.
 
    0.929
Gbro_3545
PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: scl:sce6059 ArsR family transcriptional regulator.
  
     0.709
aroQ
3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.570
Gbro_2578
PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: mlo:mll3559 transcription regulator.
  
     0.512
Gbro_0287
PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: mes:Meso_2191 ArsR family transcriptional regulator.
  
     0.507
Gbro_3415
PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: sme:SM_b20608 putative transcriptional regulator, ArsR family protein.
  
     0.498
Gbro_2520
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: hch:HCH_03204 hypothetical protein.
 
    0.425
Gbro_0286
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: sme:SM_b20607 hypothetical protein.
 
    0.401
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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