STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_0496PFAM: Anion-transporting ATPase; KEGG: dal:Dalk_2942 anion-transporting ATPase. (367 aa)    
Predicted Functional Partners:
Gbro_0497
PFAM: Anion-transporting ATPase; KEGG: scl:sce8296 anion-transporting ATPase.
 
 
 
0.987
Gbro_0498
Hypothetical protein.
       0.793
Gbro_0499
PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_3162 endoribonuclease L-PSP.
       0.793
Gbro_2405
PFAM: protein of unknown function DUF58; KEGG: cti:RALTA_B0834 hypothetical protein.
 
   
 0.770
purD
Phosphoribosylamine/glycine ligase; KEGG: hypothetical protein; K01945 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; Belongs to the GARS family.
      
 0.731
Gbro_0990
PFAM: Protein of unknown function DUF2596.
  
     0.702
Gbro_1007
PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: dal:Dalk_1813 phospholipid/glycerol acyltransferase.
  
     0.699
Gbro_0612
TIGRFAM: methyltransferase; PFAM: Protein of unknown function DUF2260; KEGG: mxa:MXAN_7473 hypothetical protein.
  
   
 0.643
Gbro_3044
PFAM: cyclase/dehydrase; Polyketide cyclase/dehydrase; KEGG: mxa:MXAN_4454 putative cyclase/dehydrase.
 
     0.639
Gbro_1006
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: dal:Dalk_1448 NAD-dependent epimerase/dehydratase.
  
     0.616
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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