STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_0601Hypothetical protein. (116 aa)    
Predicted Functional Partners:
Gbro_0602
PFAM: glycosyl transferase family 2; KEGG: lip:LIA022 cell wall biosynthesis glycosyltransferase.
 
   
 0.981
Gbro_0591
Hypothetical protein.
 
   
 0.816
Gbro_0603
PFAM: glycosyl transferase family 2; KEGG: sse:Ssed_2991 glycosyl transferase family protein.
 
     0.803
Gbro_0604
PFAM: polysaccharide biosynthesis protein; KEGG: scl:sce6683 oligosaccharyltransferase involved in polysaccharide biosynthesis.
 
   
 0.800
Gbro_0600
Hypothetical protein.
       0.626
Gbro_0599
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_2715 daunorubicin resistance ABC transporter ATPase subunit.
       0.435
Gbro_2113
Uncharacterized integral membrane protein-like protein.
  
     0.434
Gbro_0181
KEGG: ret:RHE_CH02708 hypothetical protein.
 
     0.419
Gbro_0598
PFAM: ABC-2 type transporter; KEGG: aeh:Mlg_2716 ABC-2 type transporter.
     
 0.417
Gbro_0983
PFAM: Protein of unknown function DUF2599; KEGG: pen:PSEEN2936 hypothetical protein.
  
     0.413
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.