STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_0619PFAM: extracellular solute-binding protein family 5; KEGG: mes:Meso_1835 extracellular solute-binding protein. (551 aa)    
Predicted Functional Partners:
Gbro_0616
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_1834 binding-protein-dependent transport systems inner membrane component.
 
 
 0.987
Gbro_0617
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0003257 oligopeptide ABC transporter, permease protein.
 
 
 0.984
Gbro_0618
KEGG: mes:Meso_3727 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
  
 0.960
Gbro_4499
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dda:Dd703_1808 binding-protein-dependent transport systems inner membrane component.
 
 
 0.768
Gbro_0270
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: noc:Noc_2185 ABC transporter, inner membrane subunit.
 
 
 0.759
Gbro_4498
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_1327 dipeptide ABC transporter, permease protein.
 
 
 0.757
Gbro_0060
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: bja:blr1604 ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.657
Gbro_1290
KEGG: bpm:BURPS1710b_2229 Hep_Hag family protein.
 
    0.549
Gbro_4497
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0889 oligopeptide/dipeptide ABC transporter, ATPase subunit.
 
  
 0.549
Gbro_0269
PFAM: ABC transporter related; binding-protein- dependent transport systems inner membrane component; SMART: AAA ATPase; KEGG: oan:Oant_2473 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
 
    0.545
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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