STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_0772PFAM: protein of unknown function DUF445; KEGG: glo:Glov_3026 protein of unknown function DUF445. (445 aa)    
Predicted Functional Partners:
Gbro_0773
PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: mlo:mll2952 transcriptional regulator.
       0.768
Gbro_0775
Hypothetical protein.
 
     0.720
Gbro_0776
PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: pap:PSPA7_1798 hypothetical protein.
  
    0.660
Gbro_0777
PFAM: alpha/beta hydrolase fold; KEGG: rme:Rmet_4016 3-oxoadipate enol-lactonase / 4- carboxymuconolactone decarboxylase.
       0.635
Gbro_0770
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cti:RALTA_B0495 putative dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.619
Gbro_0769
PFAM: protein of unknown function DUF344; KEGG: rpf:Rpic12D_0034 protein of unknown function DUF344.
       0.566
Gbro_0771
PFAM: regulatory protein TetR; KEGG: mxa:MXAN_5545 TetR family transcriptional regulator.
       0.565
Gbro_0774
Hypothetical protein; KEGG: vap:Vapar_0954 putative histone H1/H5 family protein, HCT subfamily.
       0.434
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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