STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_0795PFAM: Integrase catalytic region; KEGG: vap:Vapar_3658 integrase catalytic region. (425 aa)    
Predicted Functional Partners:
Gbro_0796
PFAM: protein of unknown function DUF222.
 
     0.587
Gbro_0792
PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: arsenate reductase ArsC; K03741 arsenate reductase.
       0.546
Gbro_0793
TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: dar:Daro_2636 arsenical-resistance protein ACR3.
       0.545
Gbro_0794
PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: tgr:Tgr7_1925 putative transcriptional regulator, ArsR family.
  
    0.545
Gbro_4711
PFAM: Integrase catalytic region; KEGG: mxa:MXAN_2122 IS5 family transposase orfB.
  
     0.545
Gbro_0896
PFAM: transposase IS3/IS911 family protein; KEGG: bbt:BBta_p0209 IS3/IS911 family transposase.
 
     0.523
Gbro_4710
PFAM: transposase IS3/IS911 family protein; KEGG: bbt:BBta_p0209 IS3/IS911 family transposase.
 
     0.522
Gbro_0897
PFAM: Integrase catalytic region; KEGG: mxa:MXAN_2122 IS5 family transposase orfB.
  
     0.507
Gbro_0797
Hypothetical protein.
       0.497
Gbro_1682
TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571; KEGG: ret:RHE_CH02708 hypothetical protein.
  
    0.496
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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