STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_0803PFAM: ROK family protein; KEGG: avn:Avin_03610 ROK (repressor, ORF, kinase) domain protein. (374 aa)    
Predicted Functional Partners:
Gbro_2915
TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine phosphorylation site; KEGG: yen:YE2104 PTS system beta-glucoside-specific IIABC component.
  
 
 0.966
Gbro_0802
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: scl:sce8093 putative oxidoreductase.
  
    0.782
Gbro_1620
Hypothetical protein.
 
     0.657
Gbro_0804
PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: pol:Bpro_0068 transglutaminase-like.
       0.646
Gbro_2217
TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose- specific IIB subunit; phosphotransferase system EIIC; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: aav:Aave_4250 PTS system, fructose subfamily, IIC subunit.
  
  
 0.618
Gbro_4070
KEGG: hypothetical protein.
 
   
 0.538
Gbro_3917
KEGG: bur:Bcep18194_A5490 hypothetical protein.
  
     0.535
Gbro_1964
PFAM: protein of unknown function DUF1396; KEGG: mxa:MXAN_3564 M36 family peptidase.
  
     0.534
Gbro_3322
PFAM: cysteine dioxygenase type I; KEGG: mxa:MXAN_0927 cysteine dioxygenase, type I.
 
     0.496
Gbro_3882
Hypothetical protein.
  
     0.447
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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