Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Gbro_0804PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: pol:Bpro_0068 transglutaminase-like. (269 aa)    
Predicted Functional Partners:
Gbro_2316
PFAM: protein of unknown function DUF404; protein of unknown function DUF403; protein of unknown function DUF407; KEGG: tgr:Tgr7_1015 protein of unknown function DUF404.
 
  
 0.887
Gbro_3183
PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: dar:Daro_3021 hypothetical protein.
 
    0.841
Gbro_3182
PFAM: protein of unknown function DUF403; KEGG: dat:HRM2_13800 hypothetical protein.
 
  
 0.832
Gbro_2317
PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: tgr:Tgr7_1016 transglutaminase domain protein.
  
     0.769
Gbro_0803
PFAM: ROK family protein; KEGG: avn:Avin_03610 ROK (repressor, ORF, kinase) domain protein.
       0.646
Gbro_2315
PFAM: Protein of unknown function DUF2126; transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: tgr:Tgr7_1014 transglutaminase domain protein.
 
     0.597
Gbro_0802
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: scl:sce8093 putative oxidoreductase.
       0.449
Gbro_3100
PFAM: protein of unknown function UCP012641; KEGG: bph:Bphy_4488 hypothetical protein.
 
     0.410
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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