Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Gbro_0806Hypothetical protein. (410 aa)    
Predicted Functional Partners:
Gbro_0807
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
       0.768
Gbro_0808
PFAM: glycosyl transferase family 20; KEGG: scl:sce0488 Alpha,alpha-trehalose-phosphate synthase (UDP-forming).
       0.768
Gbro_0809
Hypothetical protein.
       0.768
Gbro_1550
Hypothetical protein.
  
     0.581
Gbro_4641
Hypothetical protein; KEGG: bmj:BMULJ_05309 MarR family transcriptional regulator.
  
     0.536
Gbro_2002
Hypothetical protein; KEGG: mxa:MXAN_4606 carbohydrate-binding protein.
  
  
 0.512
Gbro_0256
PFAM: DoxX family protein; KEGG: mxa:MXAN_6633 hypothetical protein.
  
     0.487
Gbro_0810
PFAM: protein of unknown function DUF1212; KEGG: mxa:MXAN_1583 hypothetical protein.
       0.466
Gbro_4190
Hypothetical protein; KEGG: scl:sce4712 TetR family transcriptional regulator.
  
     0.455
Gbro_1218
PFAM: Mammalian cell entry related domain protein; KEGG: sat:SYN_00409 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
  
     0.448
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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