STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_0865PFAM: acyltransferase 3; KEGG: dma:DMR_26250 hypothetical membrane protein. (442 aa)    
Predicted Functional Partners:
Gbro_2446
PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: psp:PSPPH_3555 multiple antibiotic resistance operon repressor MarR.
  
     0.574
Gbro_4782
KEGG: ank:AnaeK_3971 hypothetical protein.
  
     0.480
Gbro_4264
PFAM: amidohydrolase 2; KEGG: pla:Plav_1983 amidohydrolase 2.
  
     0.434
Gbro_1083
PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: cvi:CV_0841 hypothetical protein.
  
    0.428
Gbro_0866
Hypothetical protein.
       0.418
Gbro_0149
TIGRFAM: RecB family nuclease, putative; KEGG: sml:Smlt2488 hypothetical protein.
  
    0.410
Gbro_3199
PFAM: Domain of unknown function DUF1994; KEGG: hypothetical protein.
   
  
 0.405
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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