STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Gbro_0887KEGG: bxe:Bxe_C0511 lipid-transfer protein. (390 aa)    
Predicted Functional Partners:
Gbro_0885
PFAM: protein of unknown function DUF35; KEGG: spl:Spea_2138 hypothetical protein.
 
 0.998
Gbro_0886
KEGG: pha:PSHAa0886 hypothetical protein.
 
 0.998
Gbro_0884
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pha:PSHAa0888 acyl-CoA dehydrogenase protein.
 
 0.987
Gbro_0895
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: pla:Plav_1792 3-oxosteroid 1-dehydrogenase.
  
 0.976
Gbro_0883
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bpt:Bpet0816 putative acyl-CoA dehydrogenase.
 
 0.975
Gbro_0882
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: vap:Vapar_1314 acyl-CoA dehydrogenase domain protein.
 
 0.964
Gbro_3969
Hypothetical protein.
  
  
  0.954
Gbro_4503
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: mxa:MXAN_6987 fatty oxidation complex, alpha subunit.
  
 0.939
Gbro_4817
KEGG: reu:Reut_A1514 steroid delta-isomerase.
  
  
  0.918
Gbro_3964
PFAM: protein of unknown function DUF35; KEGG: reh:H16_A0870 hypothetical protein.
 
 
 0.897
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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