STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_1083PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: cvi:CV_0841 hypothetical protein. (412 aa)    
Predicted Functional Partners:
Gbro_1080
Diguanylate cyclase; KEGG: atc:AGR_C_3648 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.
 
 0.933
Gbro_2137
PFAM: GAF domain protein; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: GAF domain protein; KEGG: scl:sce2236 putative two-component system sensor kinase.
 
 
 0.923
Gbro_1082
Hypothetical protein.
  
  
 0.919
Gbro_4299
PFAM: Sulfate transporter/antisigma-factor antagonist STAS.
  
 
 0.871
Gbro_4298
PFAM: ANTAR domain protein; GAF domain protein; SMART: GAF domain protein.
  
 
 0.868
Gbro_4293
PFAM: Sulfate transporter/antisigma-factor antagonist STAS.
  
  
 0.862
Gbro_4050
PFAM: histidine kinase HAMP region domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: histidine kinase HAMP region domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: bba:Bd1116 adenylate cyclase.
  
 
 0.830
Gbro_4294
Hypothetical protein.
  
 
 0.803
Gbro_0217
PFAM: EAL domain protein; KEGG: mei:Msip34_1295 diguanylate cyclase/phosphodiesterase.
  
 
 0.768
Gbro_3630
KEGG: ank:AnaeK_0247 phosphoribosyltransferase.
  
  
 0.742
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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