STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_1256Hypothetical protein. (257 aa)    
Predicted Functional Partners:
Gbro_1257
KEGG: similar to Prg4 protein.
       0.850
Gbro_1759
Hypothetical protein; KEGG: MUC2; mucin 2, oligomeric mucus/gel-forming; K10955 intestinal mucin-2.
  
     0.760
Gbro_4485
PFAM: NTF2 domain protein transpeptidase; KEGG: bch:Bcen2424_6865 YadA domain-containing protein.
  
     0.749
Gbro_4465
Hypothetical protein.
  
     0.748
Gbro_1991
KEGG: gme:Gmet_3050 superfamily I DNA/RNA helicase.
  
     0.742
Gbro_0783
Hypothetical protein; KEGG: YALI0C23452p.
  
     0.727
Gbro_1793
Hypothetical protein; KEGG: similar to CG4090-PA.
  
     0.715
Gbro_0153
Hypothetical protein.
  
     0.710
Gbro_3265
PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; KEGG: mxa:MXAN_1497 PQQ repeat-containing protein.
  
     0.710
Gbro_1842
Hypothetical protein.
  
     0.686
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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