STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_1336Hypothetical protein; KEGG: afw:Anae109_4471 tetratricopeptide TPR_4. (648 aa)    
Predicted Functional Partners:
Gbro_1335
TIGRFAM: chorismate mutase; KEGG: gsu:GSU1828 chorismate mutase domain- containing protein.
       0.794
Gbro_4557
Hypothetical protein; KEGG: OGFR; opioid growth factor receptor.
 
     0.751
pgi
PFAM: phosphoglucose isomerase (PGI); KEGG: sat:SYN_02950 glucose-6-phosphate isomerase; Belongs to the GPI family.
       0.740
Gbro_2402
Hypothetical protein.
  
     0.735
Gbro_4468
KEGG: bbt:BBta_3355 hypothetical protein.
 
     0.718
Gbro_2268
PFAM: Protein of unknown function DUF2029; KEGG: reh:H16_A0724 hypothetical membrane protein.
  
     0.716
Gbro_4465
Hypothetical protein.
 
     0.713
Gbro_0212
KEGG: hypothetical protein.
  
   
 0.707
Gbro_1858
Hypothetical protein.
  
     0.700
Gbro_3265
PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; KEGG: mxa:MXAN_1497 PQQ repeat-containing protein.
  
   
 0.700
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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