Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Gbro_1436 | Gbro_1455 | Hypothetical protein; KEGG: hch:HCH_06378 ATPase. | KEGG: son:SO_2666 hypothetical protein. | 0.618 |
Gbro_1452 | Gbro_1453 | TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: azo:azo0356 very short patch repair endonuclease. | TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: ecp:ECP_4572 modification methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. | 0.941 |
Gbro_1452 | Gbro_1455 | TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: azo:azo0356 very short patch repair endonuclease. | KEGG: son:SO_2666 hypothetical protein. | 0.404 |
Gbro_1453 | Gbro_1452 | TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: ecp:ECP_4572 modification methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. | TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: azo:azo0356 very short patch repair endonuclease. | 0.941 |
Gbro_1453 | Gbro_1455 | TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: ecp:ECP_4572 modification methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. | KEGG: son:SO_2666 hypothetical protein. | 0.431 |
Gbro_1455 | Gbro_1436 | KEGG: son:SO_2666 hypothetical protein. | Hypothetical protein; KEGG: hch:HCH_06378 ATPase. | 0.618 |
Gbro_1455 | Gbro_1452 | KEGG: son:SO_2666 hypothetical protein. | TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: azo:azo0356 very short patch repair endonuclease. | 0.404 |
Gbro_1455 | Gbro_1453 | KEGG: son:SO_2666 hypothetical protein. | TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: ecp:ECP_4572 modification methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. | 0.431 |